Introduction to HPC with MPI for Data Science

Introduction to HPC with MPI for Data Science PDF Author: Frank Nielsen
Publisher: Springer
ISBN: 3319219030
Category : Computers
Languages : en
Pages : 304

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Book Description
This gentle introduction to High Performance Computing (HPC) for Data Science using the Message Passing Interface (MPI) standard has been designed as a first course for undergraduates on parallel programming on distributed memory models, and requires only basic programming notions. Divided into two parts the first part covers high performance computing using C++ with the Message Passing Interface (MPI) standard followed by a second part providing high-performance data analytics on computer clusters. In the first part, the fundamental notions of blocking versus non-blocking point-to-point communications, global communications (like broadcast or scatter) and collaborative computations (reduce), with Amdalh and Gustafson speed-up laws are described before addressing parallel sorting and parallel linear algebra on computer clusters. The common ring, torus and hypercube topologies of clusters are then explained and global communication procedures on these topologies are studied. This first part closes with the MapReduce (MR) model of computation well-suited to processing big data using the MPI framework. In the second part, the book focuses on high-performance data analytics. Flat and hierarchical clustering algorithms are introduced for data exploration along with how to program these algorithms on computer clusters, followed by machine learning classification, and an introduction to graph analytics. This part closes with a concise introduction to data core-sets that let big data problems be amenable to tiny data problems. Exercises are included at the end of each chapter in order for students to practice the concepts learned, and a final section contains an overall exam which allows them to evaluate how well they have assimilated the material covered in the book.

Introduction to HPC with MPI for Data Science

Introduction to HPC with MPI for Data Science PDF Author: Frank Nielsen
Publisher: Springer
ISBN: 3319219030
Category : Computers
Languages : en
Pages : 304

Get Book

Book Description
This gentle introduction to High Performance Computing (HPC) for Data Science using the Message Passing Interface (MPI) standard has been designed as a first course for undergraduates on parallel programming on distributed memory models, and requires only basic programming notions. Divided into two parts the first part covers high performance computing using C++ with the Message Passing Interface (MPI) standard followed by a second part providing high-performance data analytics on computer clusters. In the first part, the fundamental notions of blocking versus non-blocking point-to-point communications, global communications (like broadcast or scatter) and collaborative computations (reduce), with Amdalh and Gustafson speed-up laws are described before addressing parallel sorting and parallel linear algebra on computer clusters. The common ring, torus and hypercube topologies of clusters are then explained and global communication procedures on these topologies are studied. This first part closes with the MapReduce (MR) model of computation well-suited to processing big data using the MPI framework. In the second part, the book focuses on high-performance data analytics. Flat and hierarchical clustering algorithms are introduced for data exploration along with how to program these algorithms on computer clusters, followed by machine learning classification, and an introduction to graph analytics. This part closes with a concise introduction to data core-sets that let big data problems be amenable to tiny data problems. Exercises are included at the end of each chapter in order for students to practice the concepts learned, and a final section contains an overall exam which allows them to evaluate how well they have assimilated the material covered in the book.

Introduction to High Performance Computing for Scientists and Engineers

Introduction to High Performance Computing for Scientists and Engineers PDF Author: Georg Hager
Publisher: CRC Press
ISBN: 1439811938
Category : Computers
Languages : en
Pages : 350

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Book Description
Written by high performance computing (HPC) experts, Introduction to High Performance Computing for Scientists and Engineers provides a solid introduction to current mainstream computer architecture, dominant parallel programming models, and useful optimization strategies for scientific HPC. From working in a scientific computing center, the author

Introduction to High Performance Scientific Computing

Introduction to High Performance Scientific Computing PDF Author: Victor Eijkhout
Publisher: Lulu.com
ISBN: 1257992546
Category : Algebras, Linear
Languages : en
Pages : 536

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Book Description
This is a textbook that teaches the bridging topics between numerical analysis, parallel computing, code performance, large scale applications.

High Performance Computing

High Performance Computing PDF Author: John Levesque
Publisher: CRC Press
ISBN: 1420077066
Category : Computers
Languages : en
Pages : 244

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Book Description
High Performance Computing: Programming and Applications presents techniques that address new performance issues in the programming of high performance computing (HPC) applications. Omitting tedious details, the book discusses hardware architecture concepts and programming techniques that are the most pertinent to application developers for achievi

Supercomputing Frontiers

Supercomputing Frontiers PDF Author: Rio Yokota
Publisher: Springer
ISBN: 3319699539
Category : Computers
Languages : en
Pages : 293

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Book Description
It constitutes the refereed proceedings of the 4th Asian Supercomputing Conference, SCFA 2018, held in Singapore in March 2018. Supercomputing Frontiers will be rebranded as Supercomputing Frontiers Asia (SCFA), which serves as the technical programme for SCA18. The technical programme for SCA18 consists of four tracks: Application, Algorithms & Libraries Programming System Software Architecture, Network/Communications & Management Data, Storage & Visualisation The 20 papers presented in this volume were carefully reviewed nd selected from 60 submissions.

Parallel and High Performance Computing

Parallel and High Performance Computing PDF Author: Robert Robey
Publisher: Simon and Schuster
ISBN: 1638350388
Category : Computers
Languages : en
Pages : 702

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Book Description
Parallel and High Performance Computing offers techniques guaranteed to boost your code’s effectiveness. Summary Complex calculations, like training deep learning models or running large-scale simulations, can take an extremely long time. Efficient parallel programming can save hours—or even days—of computing time. Parallel and High Performance Computing shows you how to deliver faster run-times, greater scalability, and increased energy efficiency to your programs by mastering parallel techniques for multicore processor and GPU hardware. About the technology Write fast, powerful, energy efficient programs that scale to tackle huge volumes of data. Using parallel programming, your code spreads data processing tasks across multiple CPUs for radically better performance. With a little help, you can create software that maximizes both speed and efficiency. About the book Parallel and High Performance Computing offers techniques guaranteed to boost your code’s effectiveness. You’ll learn to evaluate hardware architectures and work with industry standard tools such as OpenMP and MPI. You’ll master the data structures and algorithms best suited for high performance computing and learn techniques that save energy on handheld devices. You’ll even run a massive tsunami simulation across a bank of GPUs. What's inside Planning a new parallel project Understanding differences in CPU and GPU architecture Addressing underperforming kernels and loops Managing applications with batch scheduling About the reader For experienced programmers proficient with a high-performance computing language like C, C++, or Fortran. About the author Robert Robey works at Los Alamos National Laboratory and has been active in the field of parallel computing for over 30 years. Yuliana Zamora is currently a PhD student and Siebel Scholar at the University of Chicago, and has lectured on programming modern hardware at numerous national conferences. Table of Contents PART 1 INTRODUCTION TO PARALLEL COMPUTING 1 Why parallel computing? 2 Planning for parallelization 3 Performance limits and profiling 4 Data design and performance models 5 Parallel algorithms and patterns PART 2 CPU: THE PARALLEL WORKHORSE 6 Vectorization: FLOPs for free 7 OpenMP that performs 8 MPI: The parallel backbone PART 3 GPUS: BUILT TO ACCELERATE 9 GPU architectures and concepts 10 GPU programming model 11 Directive-based GPU programming 12 GPU languages: Getting down to basics 13 GPU profiling and tools PART 4 HIGH PERFORMANCE COMPUTING ECOSYSTEMS 14 Affinity: Truce with the kernel 15 Batch schedulers: Bringing order to chaos 16 File operations for a parallel world 17 Tools and resources for better code

Using HPC for Computational Fluid Dynamics

Using HPC for Computational Fluid Dynamics PDF Author: Shamoon Jamshed
Publisher: Academic Press
ISBN: 0128017511
Category : Science
Languages : en
Pages : 226

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Book Description
Using HPC for Computational Fluid Dynamics: A Guide to High Performance Computing for CFD Engineers offers one of the first self-contained guides on the use of high performance computing for computational work in fluid dynamics. Beginning with an introduction to HPC, including its history and basic terminology, the book moves on to consider how modern supercomputers can be used to solve common CFD challenges, including the resolution of high density grids and dealing with the large file sizes generated when using commercial codes. Written to help early career engineers and post-graduate students compete in the fast-paced computational field where knowledge of CFD alone is no longer sufficient, the text provides a one-stop resource for all the technical information readers will need for successful HPC computation. Offers one of the first self-contained guides on the use of high performance computing for computational work in fluid dynamics Tailored to the needs of engineers seeking to run CFD computations in a HPC environment

Recent Advancement in Geoinformatics and Data Science

Recent Advancement in Geoinformatics and Data Science PDF Author: Xiaogang Ma
Publisher: Geological Society of America
ISBN: 0813725585
Category : Science
Languages : en
Pages : 180

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Book Description


Data Science in Engineering, Volume 9

Data Science in Engineering, Volume 9 PDF Author: Ramin Madarshahian
Publisher: Springer Nature
ISBN: 3030760049
Category : Technology & Engineering
Languages : en
Pages : 287

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Book Description
Data Science and Engineering Volume 9: Proceedings of the 39th IMAC, A Conference and Exposition on Structural Dynamics, 2021, the ninth volume of nine from the Conference, brings together contributions to this important area of research and engineering. The collection presents early findings and case studies on fundamental and applied aspects of Data Science in Engineering, including papers on: Data Science in Engineering Applications Engineering Mathematics Computational Methods in Engineering

Parallel I/O for High Performance Computing

Parallel I/O for High Performance Computing PDF Author: John M. May
Publisher: Morgan Kaufmann
ISBN: 9781558606647
Category : Computers
Languages : en
Pages : 392

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Book Description
"I enjoyed reading this book immensely. The author was uncommonly careful in his explanations. I'd recommend this book to anyone writing scientific application codes." -Peter S. Pacheco, University of San Francisco "This text provides a useful overview of an area that is currently not addressed in any book. The presentation of parallel I/O issues across all levels of abstraction is this book's greatest strength." -Alan Sussman, University of Maryland Scientific and technical programmers can no longer afford to treat I/O as an afterthought. The speed, memory size, and disk capacity of parallel computers continue to grow rapidly, but the rate at which disk drives can read and write data is improving far less quickly. As a result, the performance of carefully tuned parallel programs can slow dramatically when they read or write files-and the problem is likely to get far worse. Parallel input and output techniques can help solve this problem by creating multiple data paths between memory and disks. However, simply adding disk drives to an I/O system without considering the overall software design will not significantly improve performance. To reap the full benefits of a parallel I/O system, application programmers must understand how parallel I/O systems work and where the performance pitfalls lie. Parallel I/O for High Performance Computing directly addresses this critical need by examining parallel I/O from the bottom up. This important new book is recommended to anyone writing scientific application codes as the best single source on I/O techniques and to computer scientists as a solid up-to-date introduction to parallel I/O research. Features: An overview of key I/O issues at all levels of abstraction-including hardware, through the OS and file systems, up to very high-level scientific libraries. Describes the important features of MPI-IO, netCDF, and HDF-5 and presents numerous examples illustrating how to use each of these I/O interfaces. Addresses the basic question of how to read and write data efficiently in HPC applications. An explanation of various layers of storage - and techniques for using disks (and sometimes tapes) effectively in HPC applications.